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Making Spinal Cord Injury (SCI) Research Accessible to Everyone. Simplified summaries of the latest research, designed for patients, caregivers and anybody who's interested.

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Bioinformatics Research

Browse the latest research summaries in the field of bioinformatics for spinal cord injury patients and caregivers.

Showing 211-220 of 334 results

NeurologyGeneticsBioinformatics

Developmental programming and lineage branching of early human telencephalon

The EMBO Journal, 2021 • September 24, 2021

The study reveals a conserved developmental map of the human telencephalon, highlighting the temporal cell fate transition from neuroectoderm (NE) to radial glial cells (RGs) to intermediate progenito...

KEY FINDING: Dorsal and ventral telencephalons share common developmental programs during neurogenesis, following a conserved trajectory from radial glial cells (RGs) to intermediate progenitor cells (IPCs_div) and then to early neuroblasts (eNBs).

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NeurologyNutrition & DieteticsBioinformatics

Food and Microbiota Metabolites Associate with Cognitive Decline in Older Subjects: A 12-Year Prospective Study

Molecular Nutrition & Food Research, 2021 • October 28, 2021

This study investigated the role of diet and gut microbiota in cognitive decline (CD) using a 12-year prospective study design involving two separate sample sets from Bordeaux and Dijon. The findings ...

KEY FINDING: Metabolites derived from cocoa, coffee, mushrooms, and red wine are associated with reduced cognitive decline.

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Spinal Cord InjuryGeneticsBioinformatics

Identification of Key eRNAs for Spinal Cord Injury by Integrated Multinomial Bioinformatics Analysis

Front. Cell Dev. Biol., 2021 • October 11, 2021

This study used bioinformatics analysis to identify key eRNAs involved in spinal cord injury (SCI). The analysis revealed a regulatory network of transcription factors, eRNAs, target genes, immune ce...

KEY FINDING: Identified 21 DETFs, 24 DEeRNAs, and 829 DETGs in SCI patients compared to healthy controls.

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Regenerative MedicineBioinformaticsBiomedical

A single-cell transcriptome of mesenchymal stromal cells to fabricate bioactive hydroxyapatite materials for bone regeneration

Bioactive Materials, 2022 • January 1, 2022

This study utilizes single-cell RNA sequencing to investigate the molecular mechanisms underlying MSC-mediated bone regeneration in different osteogenic microenvironments, specifically focusing on hyd...

KEY FINDING: HA scaffolds induce bone formation through a process similar to endochondral ossification, activating TGF-β, PTHrP, and BMP signaling pathways sequentially.

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NeurologyBioinformatics

Time Course Transcriptome Analysis of Spina Bifida Progression in Fetal Rats

Brain Sci, 2021 • November 30, 2021

The study used RNA-sequencing to identify differentially expressed genes in fetal spinal cords from rats with retinoic acid-induced spina bifida at E15, E17, and E20. The results suggest common alterat...

KEY FINDING: The study found approximately 3000, 1000, and 300 genes were differentially expressed at E15, E17, and E20, respectively, compared to control groups.

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ImmunologyNeurologyBioinformatics

Identification of Immune Cells and Key Genes associated with Alzheimer’s Disease

International Journal of Medical Sciences, 2022 • January 1, 2022

This study investigates the role of immune cells and genes in Alzheimer's Disease (AD) by analyzing transcriptomic data from the prefrontal cortex of AD patients and healthy controls. The analysis rev...

KEY FINDING: Immune infiltration in the prefrontal cortex of AD patients differs from healthy samples, highlighting alterations in the brain's immune environment during AD.

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NeurologyGeneticsBioinformatics

Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate Central Nervous System

BMC Genomics, 2022 • January 3, 2022

This study investigated DNA methylation changes in regenerative and non-regenerative regions of the Xenopus CNS after injury. The study found that DNA methylation patterns differ significantly between...

KEY FINDING: DNA from regenerative CNS (tadpole hindbrain, frog eye) was less methylated than non-regenerative CNS (frog hindbrain).

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NeurologyBioinformatics

Apolipoprotein E and sex modulate fatty acid metabolism in a prospective observational study of cognitive decline

Alzheimer’s Research & Therapy, 2022 • January 4, 2022

This study demonstrates that the early onset of CD may possibly be preceded by profound alterations in fatty acid metabolism and related metabolic pathways, which are in turn modulated by ApoE-ε4 and ...

KEY FINDING: Increased circulating levels of free fatty acids, acyl-carnitines and pantothenic acid were found among those participants who had greater odds of cognitive decline over a 12-year follow-up.

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PharmacologyBioinformaticsBiomedical

Machine-Assisted Discovery of Chondroitinase ABC Complexes Towards Sustained Neural Regeneration

Adv Healthc Mater, 2022 • May 1, 2022

The study addresses the thermal instability of ChABC, which limits its therapeutic use for CNS injuries. Machine learning was used to design copolymers that stabilize ChABC in aCSF, with promising res...

KEY FINDING: Active machine learning identified copolymers that significantly improved ChABC's thermal stability.

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Spinal Cord InjuryNeurologyBioinformatics

Temporal and spatial cellular and molecular pathological alterations with single-cell resolution in the adult spinal cord after injury

Signal Transduction and Targeted Therapy, 2022 • January 9, 2022

This study provides a detailed map of cellular and molecular changes in the mouse spinal cord after crush injury, utilizing single-cell transcriptomics to identify dynamic responses in various cell ty...

KEY FINDING: Identified 12 different major cell types and their pathological changes after spinal cord crush injury, including the infiltration of stromal cells, neutrophils, and lymphocytes at distinct times post-injury.

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