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Making Spinal Cord Injury (SCI) Research Accessible to Everyone. Simplified summaries of the latest research, designed for patients, caregivers and anybody who's interested.

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Bioinformatics Research

Browse the latest research summaries in the field of bioinformatics for spinal cord injury patients and caregivers.

Showing 291-300 of 334 results

Bioinformatics

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing

Scientific Reports, 2015 • November 10, 2015

The study aimed to characterize the large genome of the Mexican axolotl salamander (Ambystoma mexicanum) using shotgun and laser capture chromosome sequencing. Researchers generated 600 Gb of shotgun ...

KEY FINDING: The A. mexicanum genome is estimated to be ~32 Gb.

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Regenerative MedicineGeneticsBioinformatics

Positional plasticity in regenerating Amybstoma mexicanum limbs is associated with cell proliferation and pathways of cellular differentiation

BMC Developmental Biology, 2015 • November 16, 2015

The study characterized histological and transcriptional differences between EB and apical-LB tissue compared to basal-LB tissue. The stability of positional information is associated with tissue orga...

KEY FINDING: Basal-LB samples showed greater tissue organization than EB and apical-LB samples.

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NeurologyBioinformatics

Novel Neuroprotective Multicomponent Therapy for Amyotrophic Lateral Sclerosis Designed by Networked Systems

PLoS ONE, 2016 • January 25, 2016

This study utilizes a systems biology approach to identify novel drug combinations for the treatment of ALS. The researchers screened existing compounds and identified Alitretinoin plus Pranlukast (CD...

KEY FINDING: The drug combinations Alitretinoin plus Pranlukast (CD1) and Alitretinoin plus Mefloquine (CD2) were identified as potentially useful to treat ALS.

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Spinal Cord InjuryNeurologyBioinformatics

Characteristics of mRNA dynamic expression related to spinal cord ischemia/reperfusion injury: a transcriptomics study

Neural Regeneration Research, 2016 • March 1, 2016

This study investigates dynamic mRNA expression patterns in rats following spinal cord ischemia/reperfusion injury using DNA microarrays. The study identified five significant mRNA dynamic expression ...

KEY FINDING: 8,242 differentially expressed mRNAs were obtained by Multi-Class Dif in the simple ischemia group, 24-hour and 48-hour reperfusion groups.

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Spinal Cord InjuryGeneticsBioinformatics

Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effective Tissue Repair

Molecular & Cellular Proteomics, 2016 • June 1, 2016

This study provides an exhaustive spatio-temporal proteomic and biochemical analysis performed along the entire spinal cord axis in a rat model of SCI. The researchers identified specific markers for ...

KEY FINDING: Molecular and cellular processes after SCI differ significantly between segments near the lesion (R1-C1) and those further away (R2-C2 and R3-C3).

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Spinal Cord InjuryNeurologyBioinformatics

A Mathematical Model of Regenerative Axon Growing along Glial Scar after Spinal Cord Injury

Computational and Mathematical Methods in Medicine, 2016 • March 28, 2016

This study presents a mathematical model to investigate axon regeneration around glial scars after spinal cord injury, focusing on the impact of inhibitory factors and scar size. The model, based on S...

KEY FINDING: The level of inhibitory factors on the surface of glial scar significantly impacts axon elongation.

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Spinal Cord InjuryGeneticsBioinformatics

Identification of molecular pathway changes after spinal cord injury by microarray analysis

Journal of Orthopaedic Surgery and Research, 2016 • September 5, 2016

This study aimed to identify key molecular pathways involved in spinal cord injury (SCI) by analyzing gene expression profiles in rats at different time points after injury. The analysis revealed 416 ...

KEY FINDING: A total of 416 genes showed significant differential expression at all time points after SCI, suggesting their consistent involvement in the injury response.

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Regenerative MedicineGeneticsBioinformatics

Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls

eLife, 2016 • November 25, 2016

This study investigates the cellular mechanisms underlying spinal cord regeneration in axolotls, focusing on cell proliferation, neural stem cell activation, and cell influx. The researchers identifie...

KEY FINDING: The regenerating spinal cord grows with increasing velocity during the first 8 days.

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Spinal Cord InjuryRegenerative MedicineBioinformatics

Identification of Intrinsic Axon Growth Modulators for Intact CNS Neurons after Injury

Cell Rep, 2017 • March 14, 2017

The study identifies LPPR1 and LPAR1 as intrinsic axon growth modulators for intact corticospinal motor neurons after spinal cord injury. In vivo inhibition of LPAR1 or overexpression of LPPR1 enhance...

KEY FINDING: LPPR1 and LPAR1 were identified as intrinsic axon growth modulators for intact corticospinal motor neurons after adjacent injury.

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Spinal Cord InjuryNeurologyBioinformatics

RhoA Inhibitor Treatment At Acute Phase of Spinal Cord Injury May Induce Neurite Outgrowth and Synaptogenesis

Molecular & Cellular Proteomics, 2017 • June 28, 2017

This study explores the therapeutic potential of RhoA inhibitors (RhoAi) in treating spinal cord injury (SCI) by investigating their effects on neurite outgrowth and synaptogenesis both in vitro and i...

KEY FINDING: RhoAi treatment stimulates neurite outgrowth in both in vitro and in vivo environments, suggesting its potential to promote nerve regeneration after SCI.

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