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  4. Proteomic and Phosphoproteomic Analyses of the Soluble Fraction following Acute Spinal Cord Contusion in Rats

Proteomic and Phosphoproteomic Analyses of the Soluble Fraction following Acute Spinal Cord Contusion in Rats

JOURNAL OF NEUROTRAUMA, 2010 · DOI: 10.1089=neu.2009.1051 · Published: January 1, 2010

Spinal Cord InjuryNeurologyBioinformatics

Simple Explanation

This study investigates changes in proteins and their phosphorylation in rat spinal cords after a contusion injury. The goal is to better understand the molecular mechanisms behind spinal cord injury to find new treatment targets. The researchers used a technique called two-dimensional gel electrophoresis coupled with mass spectrometry to analyze the soluble proteins in the spinal cord tissue 24 hours after injury. They looked at both the amount of protein and the level of phosphorylation. They found that several proteins related to blood, stress response, energy metabolism, and cell structure were altered after the injury. These changes could offer clues about the biological processes involved in secondary damage after spinal cord injury.

Study Duration
24 hours
Participants
22 Long-Evans, young adult, female rats
Evidence Level
Not specified

Key Findings

  • 1
    Several blood-related proteins were found only in injured tissue or were highly upregulated, indicating vascular damage after SCI.
  • 2
    The levels of GFAP, a protein found in astrocytes, decreased after SCI, suggesting a reduction in astrocyte number.
  • 3
    The abundance or phosphorylation of glycolytic enzymes was differentially regulated within the first 24 hours after SCI, indicating changes in energy metabolism.

Research Summary

This study used proteomic and phosphoproteomic analyses to characterize changes in protein expression and phosphorylation in the soluble fraction of rat spinal cords 24 hours after a contusion injury. The analysis identified 26 unique proteins within 38 gel spots that were differentially regulated in abundance, phosphorylation, or both, following SCI. The identified proteins are involved in various cellular processes, including vascular damage, cellular damage, energy metabolism, cellular stress, antioxidant systems, cell signaling, and protein degradation.

Practical Implications

Biomarker Identification

The study identified proteins that move easily between compartments (e.g., to the cerebrospinal fluid or serum) and could be assessed in future studies for their biomarker potential.

Therapeutic Target Identification

The protein changes post injury may suggest additional avenues of investigation into the underlying molecular mechanisms responsible for the pathophysiological consequences of SCI.

Understanding Secondary Injury Mechanisms

Studying changes in the phosphoproteome should lead to a more complete understanding of the pathogenesis of the secondary injury of SCI.

Study Limitations

  • 1
    Limited to soluble protein fraction
  • 2
    Single time point analysis
  • 3
    Use of less sensitive SYPRO Ruby protein stain

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