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  4. Integrated Bioinformatics and Experimental Analysis Identified TRIM28 a Potential Prognostic Biomarker and Correlated with Immune Infiltrates in Liver Hepatocellular Carcinoma

Integrated Bioinformatics and Experimental Analysis Identified TRIM28 a Potential Prognostic Biomarker and Correlated with Immune Infiltrates in Liver Hepatocellular Carcinoma

Computational and Mathematical Methods in Medicine, 2022 · DOI: https://doi.org/10.1155/2022/6267851 · Published: October 1, 2022

OncologyImmunologyBioinformatics

Simple Explanation

This research investigates the role of Tripartite Motif-Containing 28 (TRIM28) in liver hepatocellular carcinoma (LIHC). TRIM28 expression, its prognostic value, and its impact on the immune system in LIHC patients are being investigated. The study uses data from The Cancer Genome Atlas (TCGA) to analyze TRIM28 expression, clinicopathological information, gene enrichment, and immune infiltration. R language was used for statistical analysis. The results are validated using GEPIA, ROC analysis, and immunohistochemical staining pictures from the THPA. The study concludes that TRIM28 sheds new light on LIHC mechanisms and can be an effective diagnostic and intervention tool.

Study Duration
Not specified
Participants
424 samples, 374 LIHC tissues and 50 normal healthy liver tissues
Evidence Level
Not specified

Key Findings

  • 1
    High TRIM28 expression level was associated with T classification, pathologic stage, histologic grade, and serum AFP levels.
  • 2
    In patients with LIHC, TRIM28 was an independent risk factor for a poor prognosis.
  • 3
    The pathways ligand-receptor interaction, which is critical in LIHC patients, were closely associated with TRIM28 expression, and the function of DC could be suppressed by overexpression of TRIM28.

Research Summary

This study explores the role of TRIM28 in LIHC, finding that its expression is upregulated in tumors and associated with poor prognosis. The research identifies correlations between TRIM28 expression and clinicopathological features, as well as its involvement in cell cycle, amino acid, and fatty acid metabolism. The study also investigates the relationship between TRIM28 and tumor-infiltrating immune cells, suggesting that TRIM28 modulates immune responses in LIHC.

Practical Implications

Diagnostic Potential

TRIM28 could serve as a diagnostic marker for LIHC, potentially more specific than AFP.

Therapeutic Target

Targeting TRIM28 could offer a novel approach to treating LIHC, particularly by modulating immune responses.

Prognostic Indicator

TRIM28 expression levels can help predict the prognosis of LIHC patients, aiding in personalized treatment strategies.

Study Limitations

  • 1
    Data sources are sourced from public databases
  • 2
    The result was validated by using qRT-PCR in cell lines only
  • 3
    The effectiveness of markers is considerably dependent on mechanism

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