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  4. Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer

Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer

BIOENGINEERED, 2021 · DOI: 10.1080/21655979.2021.1964252 · Published: August 23, 2021

OncologyGeneticsBioinformatics

Simple Explanation

This study investigates the role of alternative splicing events (ASEs) in bladder cancer (BLCA) bone metastasis, a critical area with limited research. The research aims to identify prognostic markers and understand the molecular mechanisms driving bone metastasis in BLCA. The researchers hypothesized that the splicing events of ITGB4 are regulated by the splicing factor JUP. This regulation may influence BLCA bone metastasis through the glycosphingolipid biosynthesis ganglio series pathway. The study uses data from the Cancer Genome Atlas (TCGA) and TCGASpliceSeq databases to construct predictive models and explore the molecular mechanisms involved in BLCA bone metastasis.

Study Duration
Not specified
Participants
412 patients diagnosed with bladder cancer (BLCA)
Evidence Level
Not specified

Key Findings

  • 1
    Alternative splicing events (ASEs) are associated with the occurrence and progression of bladder cancer and have a relationship with its prognosis.
  • 2
    SMOX-58,619-AP, INO80C-45,170-AP, and ITGB4-43,489-ES are significantly related to bone metastasis, splicing factors, and survival in bladder cancer patients.
  • 3
    The splicing factor JUP regulates ITGB4 alternative splicing, potentially influencing BLCA bone metastasis through the glycosphingolipid biosynthesis ganglio series pathway.

Research Summary

This study identifies alternative splicing events associated with bladder cancer bone metastasis and constructs a predictive model for prognosis. The research proposes a regulatory mechanism involving JUP and ITGB4 in the glycosphingolipid biosynthesis ganglio series pathway, impacting bone metastasis and prognosis. The findings suggest that alternative splicing events could serve as biomarkers for prognosis and potential therapeutic targets in bladder cancer with bone metastasis.

Practical Implications

Prognostic Prediction

The identified ASEs and the constructed predictive model can assist clinicians in making more accurate predictions for bone metastasis in bladder cancer patients.

Therapeutic Targets

The JUP-ITGB4 regulatory pathway and the glycosphingolipid biosynthesis ganglio series pathway represent potential therapeutic targets for bladder cancer with bone metastasis.

Biomarker Development

The identified alternative splicing events can be further developed as biomarkers for diagnosis, prognosis, and treatment monitoring in bladder cancer.

Study Limitations

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